I take on a limited number of remote consulting engagements alongside my academic research. If your team needs specialist analysis capacity in single-cell genomics, spatial transcriptomics, or computational neuroscience, I can help — from a one-off pipeline build to ongoing analytical support.

Single-Cell & Multiome Pipeline Build

End-to-end scRNA-seq or multiome analysis: from raw data to a reproducible, documented scanpy/SnapATAC2 pipeline running on your HPC. Built on experience with 788,330-nucleus ALS datasets.

Spatial Transcriptomics Analysis

Xenium, Visium, or CosMx from raw to publication-ready figures: QC, segmentation, cell typing, niche analysis (NicheCompass/Novae), and DOT deconvolution. Experience with 1.2M-cell Xenium datasets across ALS, glioblastoma, and spinal cord injury.

Differential Abundance & Composition

Milo neighbourhood-level differential abundance and scCODA compositional analysis with proper statistical design, batch correction, and publication-quality figures — the analysis most labs get wrong.

Gene Regulatory Network Inference

Cell-type-specific GRN reconstruction, network controllability (Minimum Dominating Set), and integration with GWAS/scDRS for variant-to-mechanism mapping. A scarce skill set at the intersection of network science and genomics.

Reproducibility & Scale Rescue

Your pipeline doesn't scale or reproduce? I make it run on SLURM for 1M+ cells with clean environments, version-pinned dependencies, and documented workflows.

Methods & Figures for Manuscripts

Analysis methods sections, publication-quality figure panels, and reproducible code repos — bridging the gap between raw results and a polished submission.

Credentials

  • PhD in Cybernetics (University of Reading) with postdoctoral research at the Wellcome Sanger Institute, University of Cambridge, University of Sheffield, and Stanford University (Snyder Lab)
  • 788,330-nucleus ALS multiome atlas — the largest assembled to date (70 donors)
  • 1.2M-cell 10x Xenium spatial transcriptomics pipeline across ALS/MND, glioblastoma, and spinal cord injury
  • Published in PNAS (68 citations), iScience (23 citations, INSIGNEO prize, international press), with a manuscript under review at Nature
  • Member of Cambridge Neuroscience and collaborator with the Bayraktar group at the Wellcome Sanger Institute

Engagement Models

Project

Defined deliverable, e.g. Xenium analysis of N samples to figures

From £1,500

Hourly

Small, scoped, or exploratory tasks

£80 to £150 / hr

Retainer

Ongoing analysis support for a lab or startup

£800 to £3,000 / mo

Day rate

Workshops or intensive analysis days

£500 to £900 / day

50% deposit on project engagements. All work delivered with reproducible code and documentation.

Get in Touch

Interested in working together? Book a free 30-minute scoping call or send an enquiry: